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View Code? Open in Web Editor NEWRead membrane thickness data and plot contours.
License: GNU General Public License v2.0
Read membrane thickness data and plot contours.
License: GNU General Public License v2.0
cmt - Contour Membrane Thickness -------------------------------- Dependencies: o Python 3 o Matplotlib o Numpy Recommendations: Install Anaconda with Python3 usage: cmt.py [-h] [-o output-file] [--verbose] [--levels CONTOUR_LEVELS] [--title TITLE] [--mean MEAN] [--vmin VMIN] [--vmax VMAX] [--rows ROWS] [--cols COLS] [--plot-global-average] [--filled | --no-filled] [--smooth-colorbar] [--colormap COLORMAP] dat-file [dat-file ...] Plot membrane thickness grids as contours. positional arguments: dat-file DAT file(s) to plot. optional arguments: -h, --help show this help message and exit -o output-file Filename for figure. File extension determines file type. --verbose, -v Set verbose level. Repeated usage increases verbosity. --levels CONTOUR_LEVELS Set the number of contour levels. --title TITLE Title for figure. --mean MEAN A real number, "local", "global", or the mean over another dat file. Remove the given mean from each figure. --vmin VMIN Set minimum contour value. --vmax VMAX Set maximum contour value. --rows ROWS Set maximum number of plot rows. --cols COLS Set maximum number of plot columns. --plot-global-average Plot the average contour over all inputs. --filled Plot filled contours. --no-filled Plot contours as lines --smooth-colorbar Use a smoothly varying colorbar. --colormap COLORMAP Change the colormap to one supported by Matplotlib or CMashing. Use "list" to see all available colormaps. Written by Jonathan Coles <[email protected]>
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