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learn-c-the-hard-way-exercise

marginalign

UCSC Nanopore

ml-learn

poretools

a toolkit for working with Oxford nanopore data

protect

pyrwrapper

qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

rnaseq-recompute-analysis

Analysis of RNA-seq recompute expression data

rstudio-docker

stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

strander

surpi

SURPI

tmr_search

Transcriptional Master Regulator search in Cancer, a pipeline using MARINa

toil-lib

A common library for functions and tools used in toil-based pipelines

toil-scripts

A collection of scripts that use Toil to implement genomics pipelines

toil_docker_wrappers

toolbox

random scripts

transgene

This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations

typhon

ucsc_viper

The UCSC version of the VIPER package for bioinformatics and systems biology

varscan2

Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2

wambam

wglasso

Gene Network Reconstruction by Integration of Prior Biological Knowledge.

workshop-2018