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ms-fasta

mspire library for working with fasta and related files

ms-in_silico

mspire library supporting in-silico calculations for mass spec data (protein digestion, peptide fragmentation, etc.)

ms-mascot

mspire library for working with mascot files

ms-msrun

An mspire library for working with LC/MS runs

ms-template

An mspire library that is merely a template for other mspire libraries

ms-xcalibur

mspire library for working with xcalbur generated data (.RAW files)

msabundancesim

A simulator for creating case and control "samples" (molecule and abundance lists) in simple or .fasta format with reasonable variance from one or more real world examples.

mwe-biblatex-biber

a minimum working example of using biblatex and biber from http://tex.stackexchange.com/questions/21486/error-message-when-using-biber

numrb

Numeric arrays modeled after numpy and narray that are easily modifiable using FFI-Inliner.

optrite

Unoriginal option parsing in the spirit of trollop, micro-optparse, commander, and optitron.

os-dockerfiles

Dockerfiles for various operating systems

pandoc-ruby

Lightweight Ruby wrapper for Pandoc

pip-upgrader

An interactive pip requirements upgrader. It also updates the version in your requirements.txt file.

portfolio

Portfolio for John T. Prince, PhD

present

A terminal-based presentation tool with colors and effects.

pymarkdown

rserve-simpler

Adds a simple interface on top of rserve-client

ruby-units

A unit handling library for ruby

ruby_gnuplot

The ruby gnuplot gem [gnuplot] [rgnuplot] (official releases of the gnuplot gem are from rdp branch)

ruby_gtk3_tutorial

A tutorial for using Gtk3 from ruby

runarray

pure ruby implementation of NArray

simpler

simpler ("Simple R") is a lightweight wrapper of R (really Rscript) inspired by the gnuplot and rsruby gems.

soundscapes

Experiments with sound and music

spec-more

very terse syntax for testing/specing ala Test::More

terrapin

yet another mass spec viewer. uses rubygame and FFI-OpenGL for simple scripting and FFI-Inliner for blazing fast speed. Meant to run mzML and mzIdentML.

validators

Python Data Validation for Humans™.

vim-colorschemes

one colorscheme pack to rule them all!

vita_maker

using a validated YAML file, creates your vita