My network research in theoretical light-harvesting The duration of this study spanned from Feb 2013 to Jul 2013, by Tzu-Chi Yen, under the supervision of Professor Yuan-Chung Cheng.
- [code-network] code for calculating the quantum yield and excitation lifetime of random networks
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MAIN:
- box_properness.m (draw the pairwose distribution function for different geometry)
- DipoleCoupling.m
- FRate.m
- rateM.m
- whatsDE_rand.m
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CONFIGURATION GENERATION:
- realn_box_p2.m
- realn_box_p6.m
- realn_sphere.m
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QY CALAULATION:
- rate_box.m
- rate_ps_1.m
- rate_ps_1_rand.m (ploting with randomized energy configuration for PSI)
- rate_box_rand.m (ploting with randomized energy for 5 highest/lowest QY configuration for random network with box geometry)
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MINOR CODES:
- drawbox_ps1.tcl (code to draw the box of figure-1 in VMD)
- rate_ps1_p6_pert (code to randomly shuffle dipole orientation in PSI stucture, except the central 6 chromophores remain fixed)
- plot_fig_2b_ps1.m (for plotting figure-2b)
- plot_fig_2b.m (for plotting figure-2b)