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nnunet

numerical-tours

Numerical Tours of Signal Processing

otml2021.github.io

Website for the OTML2021 workshop

petctseg

Automatic segmentation models for PET and CT scans

prepostseg

Pre-processing and post-processing for medical image segmentation

python

All Algorithms implemented in Python

rivuletpy

Large scale 3D Neuron Tracing/Neuron reconstruction in Python for 3D microscopic images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins. Also works for general centreline-extraction tasks with mhd images.

segloss

A collection of loss functions for medical image segmentation

segwithdistmap

How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study

simplecrf

matlab and python wrap of crf and dense crf, both 2d and 3d are supported

sota-medreg

State-of-the-art medical image registration methods

sota-medseg

SOTA medical image segmentation methods based on various challenges

tnscui2020

3 Steps achieve SOTA in MICCAI 2020 Thyroid Nodule Segmentation Challenge

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

tutorials

机器学习相关教程

ua-mt

code for MICCAI 2019 paper 'Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation'.

umis

Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"