This includes everything required to build a docker and corresponding singularity container for the bedpostx pipeline.
Just clone and run build.sh
:
git clone https://github.com/justinblaber/bedpostx_app.git
cd bedpostx_app/
./build.sh
For docker:
sudo docker run --rm \
--runtime=nvidia \
-v $(pwd)/INPUTS/:/INPUTS/ \
-v $(pwd)/OUTPUTS:/OUTPUTS/ \
--user $(id -u):$(id -g) \
justinblaber/bedpostx
For singularity:
singularity run -e \
--nv \
-B INPUTS/:/INPUTS \
-B OUTPUTS/:/OUTPUTS \
shub://justinblaber/bedpostx_app
For more detailed instructions on the inputs please visit: https://justinblaber.org/bedpostx/