This project forked from linlabbcm/rose2
License: Other
Rank ordering of super-enhancers.
pip install -e git+https://github.com/linlabbcm/rose2.git
The CRC software uses the following dependencies:
Bamliquidator
Samtools
As a command line tool:
rose2 -g [GENOME] -i [INPUT_REGION_GFF] -r [RANKBY_BAM_FILE] -o [OUTPUT_FOLDER] [OPTIONAL_FLAGS]
As a python library:
import rose2
rose2.rose(input_file, rankby, output_folder, genome, bams=None, control='', stitch=None, tss=0, mask_file=None)
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