Java 1.7 Hadoop 2.6.0
Motif uses Map Reduce to find the best median string representation for an entire dna sequence input. Hadoop is used to optimize the solution so as that it can be run in a minimal amount of time given the large problem input set.
hadoop -jar Motif.jar <DNA_Input> <OutPut>
####Components
The Application jar: Motif/Motif.jar Test Data: Mofif/testData.txt Small input test data: Motif/AltTestData.txt Output from my test: output.txt
hadoop jar ~/Motif/Motif.jar ~/Motif/testData.txt ~/Motif/Output