Code to replicate the results of the ms: Tracing evolutionary trajectories in the presence of gene flow in South American temperate lizards (Squamata: Liolaemus kingii group)
Evolution DOI: 10.1093/evolut/qpae009
Note: the input required by the scripts is hosted in Dryad (https://doi.org/10.5061/dryad.05qfttf9k). Raw ddRAD sequence reads are deposited in NCBI's Short Read Assembly under Bioproject PRJNA1054749