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ycs's Introduction

Transcriptome analysis of Yellow Canopy Syndrome (YCS) in sugarcane

  • slurm scripts for running on TACC's Stampede
  • scripts:
    • ycsQCdata.slurm: fastqc and trimmomatic
    • ycsReadNorm.slurm: read normalization using Trinity
    • ycs_assemble_trinity.sh: TACC script splitter to run Trinity assembly
    • ycsQCassembly.slurm: assessing Trinity assembly
  • test/
    • scripts for running single sets of files, and testing parameters for different steps

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