kastman Goto Github PK

2017

209final

a-2017

Public Repository for cs109a, 2017 edition

agape

AGAPE (Automated Genome Analysis PipelinE) for yeast pan-genome analysis

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

beeradvocate-scraper

Scrape the beer details from beeradvocate

biocode

Bioinformatics code libraries and scripts

bioconda-recipes

Conda recipes for the bioconda channel.

bourbon

Bourbon is a set of Sass mixins using SCSS syntax

brainimagingpipelines

BIPs

busco-docker

Docker Containger for BUSCO Annotation QC

comfy_imprint

Distributed as a gem, relies on SimpleForm, while this is an engine, it's inteded for use with Comfortable Mexican Sofa, and it may work with other Rails apps, but is not tested for them. Why not comfy_contact - cause keeping track of ComfyContact::Contact.contact - hurts my head.

conda-recipes

Conda Recipes in support of Psychopy

condorsurfer

Project for running Freesurfer jobs through condor using Scarcity

coreg_nipype_error

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

dcmstack-feedstock

A conda-smithy repository for dcmstack.

docker-orthofinder

Dockerfile for OrthoFinder tool

docs

Source repository for https://docs.qiime2.org

escoffier

Administrative prep tasks, from mother sauces to hotel pans

eyecam

Python script to record eye camera video while displaying feed to researcher during fMRI experiment

fitlins

Fit Linear Models to BIDS Datasets

fitz

Modern Nipype Workflow Management based on Lyman

fitz_nwlabs_spm_pipeline

Fitz Workflows for NWLabs SPM Analyses

funannotate

Eukaryotic Genome Annotation Pipeline

hcpcommon

Small Utilities for HCP Psychopy Tasks

hcppipelines

heudiconv-feedstock

A conda-smithy repository for heudiconv.

iohub

A Python program, running as an independent process, that provides a 'proxy like' service for experiment runtimes ( psychopy ) and devices ( keyboard, mouse, parallel port, eye tracker, ... ).

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics