Comments (2)
tillea
commented on July 16, 2024
Hi,
for the Debian package I've used 2to3 and some manual editing to create a patch which passes the unit tests provided by you with Python3.
Feel free to cherry-pick from this, Andreas.
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katholt
commented on July 16, 2024
Thanks Andreas. I really appreciate this - we simply haven't had time to try porting, but we will do some testing of this patch and hopefully can update srst2 release to python3 in the new year.
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Related Issues (20)
- results filter for antibiotic resistance genes HOT 3
- KeyError with one header in CARD HOT 1
- Same output entries from db HOT 1
- VFDB cannot be executed from the middle.
- Using srst2 for metagenomic screening HOT 1
- databases not updated HOT 1
- Different naming from Resfinder CGE db HOT 3
- Clustering CARD database HOT 4
- password request HOT 1
- Gene typing gene results contain last hit of the list and not the best hit
- "ecoli.txt" HOT 1
- srst2_and_bowtie2 HOT 1
- Neisseria Gonorrhoeae
- output
- urllib2.URLError:
- SyntaxError when running srst2 HOT 1
- Indel variation in reference alleles lead to sporadic ST miscalls for S. aureus
- confusing or incorrect scoring leads to mis-called allele
- Error in output when a gene contains a parentheses
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