Comments (4)
Have you made it ? I found the same problem
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Have you made it ? I found the same problem
No luck, I decided to move onto other projects while I wait for a reply.
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Sorry for the delay in replying, we are not maintaining the clustering scripts as we don't have staff to do so and most people use the provided resistance DB. However we have updated the resistance DB provided to one that is based on CARD v.3.0.8 - available in data/CARD_v3.0.8_SRST2.fasta
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Related Issues (20)
- read mapping multiple references? HOT 1
- conda install failed HOT 3
- results filter for antibiotic resistance genes HOT 3
- KeyError with one header in CARD HOT 1
- Please port to Python3 HOT 2
- Same output entries from db HOT 1
- VFDB cannot be executed from the middle.
- Using srst2 for metagenomic screening HOT 1
- databases not updated HOT 1
- Different naming from Resfinder CGE db HOT 3
- password request HOT 1
- Gene typing gene results contain last hit of the list and not the best hit
- "ecoli.txt" HOT 1
- srst2_and_bowtie2 HOT 1
- Neisseria Gonorrhoeae
- output
- urllib2.URLError:
- SyntaxError when running srst2 HOT 1
- Indel variation in reference alleles lead to sporadic ST miscalls for S. aureus
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