kcl-bmeis/spineannotationslicelet

Slicelet module to facilitate annotation of vertebrae from data stored on XNAT

spineannotationslicelet's Issues

xnat search query changes

To discuss:

1. Should the search query be adapted to skip different volume reconstructions of the DICOM data displaying the same scan? E.g. different voxel sizes, different FOV and orientation.
2. How to then make sure to keep the largest FOV if multiple are provided?
3. Filter out 2D images? Maybe this could also be a checkbox option in the GUI.
4. Filter out images with errors in the volume reconstruction

xnat object extra features

We need to add:

1. a way to skip scans with existing annotations
2. a way to store that scans should be skipped even without annotations
3. a way to download annotations
4. a way to specific whether scans should be skipped or their annotation edited

proposed

1. simply query for existence of file in the next()
2. potentially use a code in the note attribute of the scan data type?
3. rest call
4. bool in xnat object constructor - need to consider store new annotations rather than overwriting

@dadrobny Anything else?