kelsonss / 2p_fluoro_pipeline-2.1 Goto Github PK
View Code? Open in Web Editor NEWKelson's branch for fluorescence extraction and analysis
Kelson's branch for fluorescence extraction and analysis
If thorimage was in stimulus mode, the current extraction algo will fail.
the solution would be to find the onset and offset of each trial and find the number of frames that land inside that boundary.
alternatively. load the file and figure out when there is a large difference between frames and use that to determine frame times.
Nik noted that a few frames are not registered in thorsync so alternative plan is foolproof when this occurs
Need to have a function that takes the psignalfile and parses the behavioral response and lick rate by level. also should have the option to average across days
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