kevin218/astraeus

Astraeus is a general-purpose tool that manages your data using Xarray structures and reads/writes data from/to your exoplanet data reduction pipeline.

astraeus's Issues

[Bug]: Issues with Eureka!'s S4 Astraeus Saving

I am currently getting an issue with Eureka!'s Stage 4 save files, where the save files are successfully made, but then it seems an error occurs when the automated garbage collection tries to close the files (which seem to have already been closed). I suspect this is a bug with Astraeus, but I am confused why this is only happening with Eureka!'s Stage 4. Any thought @kevin218?

Traceback:

Saving results
Finished writing to /Volumes/DataDrive/WASP-12b_WFC3/G102/visit11/Stage4/S4_2022-06-29_wfc3_run2/ap5_bg5/S4_wfc3_ap5_bg5_SpecData.h5
Finished writing to /Volumes/DataDrive/WASP-12b_WFC3/G102/visit11/Stage4/S4_2022-06-29_wfc3_run2/ap5_bg5/S4_wfc3_ap5_bg5_LCData.h5
Exception ignored in: <function CachingFileManager.__del__ at 0x180af74c0>
Traceback (most recent call last):
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/xarray/backends/file_manager.py", line 244, in __del__
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/xarray/backends/file_manager.py", line 222, in close
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/h5netcdf/core.py", line 1125, in close
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/h5py/_hl/files.py", line 525, in close
TypeError: bad operand type for unary ~: 'NoneType'
Exception ignored in: <function File.close at 0x180eceb80>
Traceback (most recent call last):
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/h5netcdf/core.py", line 1125, in close
  File "/Users/tjbell1/miniconda3/envs/eureka/lib/python3.9/site-packages/h5py/_hl/files.py", line 525, in close
TypeError: bad operand type for unary ~: 'NoneType'`