Comments (3)
from kevlar.
Minimal reporting added in #65. Leaving this thread open to entertain considerations raised by @ctb.
from kevlar.
The introduction of Snakemake workflows in #305 and #306 raises the possibility of recommending Snakemake as the primary interface for most users, with the kevlar
command documented for users that are curious or need to tweak results. In any case, I think with a small amount of effort we can improve and capture the existing logging outputs and save them to standardized locations in the Snakemake working directory, creating a nice record of provenance. Capturing logs when running kevlar
directly will be left as an exercise for the user. :-)
I don't have much interest in going down the rabbit hole we started exploring in dib-lab/khmer#676.
from kevlar.
Related Issues (20)
- Bug with log-space transformation
- Command or script for inspecting ambiguous calls
- MemoryError HOT 3
- Execution failed due to high FPR in case HOT 4
- Failed tests HOT 8
- Dead links to tutorial files HOT 3
- Empty files produced by kevlar split cause crash of kevlar assemble HOT 3
- python 3.6 install - pytest failures - 26 failed, 347 passed (pytest 5.3.5?) HOT 5
- Tutorial: Error on running kevlar filter HOT 9
- Clarification - how to avoid high FPR HOT 3
- kevlar memory error HOT 2
- partition, node error HOT 3
- Controls for simlike HOT 2
- VCF Parsing Issue HOT 1
- Where is kevlar? HOT 3
- How to just get the Kmer?
- Kevlar novel multithreading HOT 2
- count_control error: estimated false positive rate is 0.385 (FPR too high, bailing out!!! HOT 5
- > 30,000 variants reported from trio-analysis with FPR 0.001? HOT 6
- Is kevlar able to detect duplications/repeat expansions and in general CNV? HOT 1
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