Type: User
roary
Rapid large-scale prokaryote pan genome analysis
run-wgcna
Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
salmonella-crispr-typing
salphagome
Novel Discovery of Phages from Salmonella Sequences
samclip
Filter SAM file for soft and hard clipped alignments
scoary
Pan-genome wide association studies
seqnet
An R package for simulating RNA-sequence datasets from regulatory networks
seqprep
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
seqsero2
SeqSero2
shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
sibeliaz
A fast whole-genome aligner based on de Bruijn graphs
signalalign
HMM-HDP models for MinION signal alignments (not mine, just collecting it for my pipelines)
snpbac
SNP and variant calling pipeline for bacteria
spades
SPAdes Genome Assembler
staramr
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
tutorials
Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
tutorials-1
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
unicycler
hybrid assembly pipeline for bacterial genomes
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
