This repository is for analysis, evolution and spread of Grapevine red blotch virus (GRBaV) using Nextstrain resources
- nextstrain shell . (This helps you enter the runtime) if you installed Nextstrain with docker runtime
- nextstrain build --cpus 1 . (This runs the automated build with snake)
- view the results with: nextstrain view auspice/
Note: if you have made changes and want to rerun Nextstrain again, delete the previous generated results with:
- rm -rf results/ auspice/
Nextstrain was developed by the Nextstrain core team, if you use this repository dont for get to give them credit, they surely did an amazing work to create an open source code for Nextstrain.
- Hadfield, James, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, and Richard A. Neher. "Nextstrain: real-time tracking of pathogen evolution." Bioinformatics 34, no. 23 (2018): 4121-4123.
- https://nextstrain.org/