kiyou/pyxtal

A code to generate atomic structure with symmetry

Table of content

• Introduction
• Quick Start
• Current Features
• Installation
• Citation
• How to contribute?

Introduction

PyXtal is an open source Python package which was initiated by Qiang Zhu and Scott Fredericks at department of Physics and Astronomy, University of Nevada Las Vegas. The goal of PyXtal is to develop a fundamental library to allow one to design the material structure with a certain symmetry constraint. These structures can exported to various structural formats for further study. See the documentation for more information.

To contribute to this project, please check How to contribute?.

Quick Start

• Atomic crystal
• Molecular crystal
• XRD
• Molecular Packing

Current Features

• Generation of atomic structures for a given symmetry and stoichiometry (0-3D)
• Generation of molecular crystals (1-3D) with the support of special Wyckoff positions.
• Structure manipulation via subgroup/supergroup symmetry relation
• Geometry optimization from built-in and external optimization methods.
• Internal support of cif file and many other formats via pymatgen or ASE.
• Easy access to symmetry information (e.g., Wyckoff, site symmetry and international symbols).
• X-ray diffraction analysis and its online application

Installation

To install the code, one just needs to do

pip install pyxtal

or

pip install --upgrade git+https://github.com/qzhu2017/PyXtal.git@master

Citation

Fredericks S, Parrish K, Sayre D, Zhu Q*(2020) PyXtal: a Python Library for Crystal Structure Generation and Symmetry Analysis. [arXiv link]

@article{pyxtal,
title = "PyXtal: A Python library for crystal structure generation and symmetry analysis",
journal = "Computer Physics Communications",
volume = "261",
pages = "107810",
year = "2021",
issn = "0010-4655",
doi = "https://doi.org/10.1016/j.cpc.2020.107810",
url = "http://www.sciencedirect.com/science/article/pii/S0010465520304057",
author = "Scott Fredericks and Kevin Parrish and Dean Sayre and Qiang Zhu",
}

How to contribute?

This is an open-source project. Its growth depends on the community. To contribute to PyXtal, you don't necessarily have to write the code. Any contributions from the following list will be helpful.

• the PyXtal project and recommend it to your colleagues/friends
• Open an to report the bug or address your wishlist or improve our documentation
• the repository and send us the pull request