kmsmith137/sp_hdf5

Header-only C++ library with "thin" wrappers around libhdf5_cpp

sp_hdf5's Issues

Missing attributes when compiling

Hi Kendrick,

Have you ever seen these issues when compiling? This is probably an issue on my side, but I'm curious if this is something you have observed before.

g++ -std=c++11 -Wall -O3 -march=native -I. -I/usr/local/hdf5/include -o example_read example_read.cpp -lhdf5_cpp -lhdf5
In file included from example_read.cpp:5:0:
sp_hdf5.hpp: In function ‘H5::Group sp_hdf5::hdf5_open_group(const H5::CommonFG&, const string&)’:
sp_hdf5.hpp:33:96: error: ‘const class H5::CommonFG’ has no member named ‘openGroup’
 inline H5::Group hdf5_open_group(const H5::CommonFG &x, const std::string &name)    { return x.openGroup(name); }
                                                                                                ^
sp_hdf5.hpp: In function ‘H5::Group sp_hdf5::hdf5_create_group(const H5::CommonFG&, const string&)’:
sp_hdf5.hpp:34:96: error: ‘const class H5::CommonFG’ has no member named ‘createGroup’
 inline H5::Group hdf5_create_group(const H5::CommonFG &x, const std::string &name)  { return x.createGroup(name); }
                                                                                                ^
sp_hdf5.hpp: In function ‘H5::Attribute sp_hdf5::hdf5_open_attribute(const H5::H5Location&, const string&)’:
sp_hdf5.hpp:41:109: error: ‘const class H5::H5Location’ has no member named ‘openAttribute’
 inline H5::Attribute hdf5_open_attribute(const H5::H5Location &x, const std::string &attr_name)  { return x.openAttribute(attr_name); }
                                                                                                             ^
In file included from example_read.cpp:5:0:
sp_hdf5.hpp: In function ‘bool sp_hdf5::hdf5_attribute_exists(const H5::H5Location&, const string&)’:
sp_hdf5.hpp:43:102: error: ‘const class H5::H5Location’ has no member named ‘attrExists’
 inline bool hdf5_attribute_exists(const H5::H5Location &x, const std::string &attr_name)  { return x.attrExists(attr_name); }
                                                                                                      ^
sp_hdf5.hpp: In function ‘H5::DataSet sp_hdf5::hdf5_open_dataset(const H5::CommonFG&, const string&)’:
sp_hdf5.hpp:69:105: error: ‘const class H5::CommonFG’ has no member named ‘openDataSet’
 inline H5::DataSet hdf5_open_dataset(const H5::CommonFG &x, const std::string &dataset_name) { return x.openDataSet(dataset_name); }
                                                                                                         ^
In file included from sp_hdf5.hpp:103:0,
                 from example_read.cpp:5:
sp_hdf5_implementation.hpp: In function ‘std::vector<long long unsigned int> sp_hdf5::hdf5_get_attribute_shape(const H5::H5Location&, const string&)’:
sp_hdf5_implementation.hpp:90:29: error: ‘const class H5::H5Location’ has no member named ‘openAttribute’
     return hdf5_get_shape(x.openAttribute(attr_name));
                             ^
sp_hdf5_implementation.hpp: In function ‘std::unordered_set<std::__cxx11::basic_string<char> > sp_hdf5::hdf5_get_attribute_names(const H5::H5Location&)’:
sp_hdf5_implementation.hpp:104:17: error: ‘class H5::H5Location’ has no member named ‘iterateAttrs’
     int ret = y.iterateAttrs(_attr_enumerate, NULL, &s);
                 ^
In file included from sp_hdf5.hpp:103:0,
                 from example_read.cpp:5:
sp_hdf5_implementation.hpp: In function ‘T sp_hdf5::hdf5_read_attribute(const H5::H5Location&, const string&)’:
sp_hdf5_implementation.hpp:178:38: error: ‘const class H5::H5Location’ has no member named ‘openAttribute’
     return hdf5_read_attribute<T> (x.openAttribute(attr_name));
                                      ^
sp_hdf5_implementation.hpp: In function ‘std::vector<T> sp_hdf5::hdf5_read_attribute(const H5::H5Location&, const string&, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:184:38: error: ‘const class H5::H5Location’ has no member named ‘openAttribute’
     return hdf5_read_attribute<T> (x.openAttribute(attr_name), expected_shape);
                                      ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_read_attribute(const H5::H5Location&, const string&, const T*, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:190:27: error: ‘const class H5::H5Location’ has no member named ‘openAttribute’
     hdf5_read_attribute(x.openAttribute(attr_name), data, expected_shape);
                           ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_attribute(const H5::H5Location&, const string&, const T&)’:
sp_hdf5_implementation.hpp:198:25: error: ‘const class H5::H5Location’ has no member named ‘createAttribute’
     H5::Attribute a = x.createAttribute(attr_name, hdf5_type<T> (), attrspace);
                         ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_attribute(const H5::H5Location&, const string&, const T&) [with T = std::__cxx11::basic_string<char>; std::__cxx11::string = std::__cxx11::basic_string<char>]’:
sp_hdf5_implementation.hpp:207:25: error: ‘const class H5::H5Location’ has no member named ‘createAttribute’
     H5::Attribute a = x.createAttribute(attr_name, strtype, attrspace);
                         ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_attribute(const H5::H5Location&, const string&, const T*, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:218:25: error: ‘const class H5::H5Location’ has no member named ‘createAttribute’
     H5::Attribute a = x.createAttribute(attr_name, hdf5_type<T>(), attrspace);
                         ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_attribute(const H5::H5Location&, const string&, const T*, const std::vector<long long unsigned int>&) [with T = std::__cxx11::basic_string<char>; std::__cxx11::string = std::__cxx11::basic_string<char>]’:
sp_hdf5_implementation.hpp:236:25: error: ‘const class H5::H5Location’ has no member named ‘createAttribute’
     H5::Attribute a = x.createAttribute(attr_name, strtype, attrspace);
                         ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_attribute(const H5::H5Location&, const string&, const std::vector<T>&)’:
sp_hdf5_implementation.hpp:247:25: error: ‘const class H5::H5Location’ has no member named ‘createAttribute’
     H5::Attribute a = x.createAttribute(attr_name, hdf5_type<T>(), attrspace);
                         ^
sp_hdf5_implementation.hpp: In function ‘std::vector<long long unsigned int> sp_hdf5::hdf5_get_dataset_shape(const H5::CommonFG&, const string&)’:
sp_hdf5_implementation.hpp:278:29: error: ‘const class H5::CommonFG’ has no member named ‘openDataSet’
     return hdf5_get_shape(f.openDataSet(dataset_name));
                             ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_read_dataset(const H5::CommonFG&, const string&, T*, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:323:25: error: ‘const class H5::CommonFG’ has no member named ‘openDataSet’
     hdf5_read_dataset(f.openDataSet(dataset_name), out, expected_shape);
                         ^
sp_hdf5_implementation.hpp: In function ‘std::vector<T> sp_hdf5::hdf5_read_dataset(const H5::CommonFG&, const string&, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:329:36: error: ‘const class H5::CommonFG’ has no member named ‘openDataSet’
     return hdf5_read_dataset<T> (f.openDataSet(dataset_name), expected_shape);
                                    ^
sp_hdf5_implementation.hpp: In function ‘void sp_hdf5::hdf5_write_dataset(const H5::CommonFG&, const string&, const T*, const std::vector<long long unsigned int>&)’:
sp_hdf5_implementation.hpp:336:29: error: ‘const class H5::CommonFG’ has no member named ‘createDataSet’
     H5::DataSet dataset = f.createDataSet(dataset_name, hdf5_type<T>(), dataspace);
                             ^
sp_hdf5_implementation.hpp: In constructor ‘sp_hdf5::hdf5_extendable_dataset<T>::hdf5_extendable_dataset(const H5::CommonFG&, const string&, const std::vector<long long unsigned int>&, int)’:
sp_hdf5_implementation.hpp:383:23: error: ‘const class H5::CommonFG’ has no member named ‘createDataSet’
     this->dataset = x.createDataSet(dataset_name, hdf5_type<T>(), data_space, prop_list);
                       ^

I am using version 1.10 of the hdf5 library, with no others installed. I looked inside H5Cpp.h and H5Object.h, and those attributes are indeed there.

Cheers,
Miles