Comments (1)
this was nicely tackled in #48 PR. We should also add BLOSUM / other PAM matrices. Also an argument to choose the matrix will be needed. In the beginning we can set it to None and require user to choose one from provided. It will eliminate need to guess if a sequence consists of aminoacids or nuclotides (we don't have matrices for nucleotides)
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Related Issues (20)
- Add basic description to built-in help
- Eliminate repetitive fragments of code in 'plotter.py' HOT 1
- Show messages in status bar after file selection and plotting HOT 1
- Graphical and command-line interface for sequence retrieval HOT 1
- Clean dotplot.py and gui.py to raise its score in pylint to at least 7.5 HOT 6
- Add exemplar sequence identifiers to chooser
- Add help/tutorial window to GUI
- Save plot to file
- Add axes labels HOT 1
- "Undo" option
- Fetch sequence by gene
- Implement "window-size" for plotter HOT 1
- Increase tests coverage to at least 75%
- Use block elements from UTF-8 charset to display different shades of dotplot HOT 1
- Add options panel where a user can set parameters for plotter like "window size" or "stringency" HOT 1
- Add "stringency" parameter to CLI (argument_parser.py)
- Let user decide if sequence should be displayed HOT 1
- Sequence label in matplotilb does not work well with window_size option
- [proposition] Rewrite "readme" to rst HOT 1
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