kullrich/orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

orthomap's Issues

question and issue regarding "structure"

1. One question that I have is that currently a user has to do

from orthomap import qlin

to use the function within qlin. It is not possible to do

import orthomap

orthomap.qlin

Is this a functionality we want to implement?

2. One issue that I have is that there is a file called orthomap.py and the name of the package is also orthomap. This could become confusing. Should we rename the file?