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bat_cortex_strfs

For generating and analyzing encoding models of bat primary auditory cortex

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cosyne-2023-tutorial

datajoint-docs

DataJoint Documentation

datajoint-elements

DataJoint Elements is a collection of curated computational workflow for neurophysiology experiments.

datajoint-labbook

DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.

datajoint-python

Relational data pipelines for the science lab

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

djsciops-cicd

dmrgeneration

element-animal

DataJoint Element for animal management

element-array-ephys

DataJoint Element for Neuropixels analysis with Kilosort

element-calcium-imaging

DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p

element-deeplabcut

DataJoint Element for behavioral analysis with DeepLabCut

element-electrode-localization

DataJoint Element for localizing Neuropixels electrodes

element-event

DataJoint Element for event-based behavior experiments

element-facemap

DataJoint Element for behavioral analysis with Facemap

element-interface

Common functions for the DataJoint Elements

element-lab

DataJoint Element for lab management

element-miniscope

DataJoint Element for miniscope calcium imaging analysis with CaImAn

element-moseq

DataJoint Element for Motion Sequencing with Keypoint-MoSeq

element-optogenetics

DataJoint Element for optogenetic experiments

element-session

DataJoint Element for session management

element-zstack

DataJoint Element for volumetric data analysis using BossDB

example-notebooks

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

figurl

Create shareable, interactive, live figures on the distributed web using Python

fmnotchtuning

Practicing git version control and uploading basic data analysis code

ibl-gitops

DataJoint deployments for IBL's kubernetes cluster. Codebase for IBL Navigator located in: https://github.com/datajoint-company/ibl-navigator.