lars-von-buchholtz/read-roi

Read ROI files .zip or .roi generated with ImageJ.

read-roi

Read ROI files .zip or .roi generated with ImageJ. Code is largely inspired from : http://rsb.info.nih.gov/ij/developer/source/ij/io/RoiDecoder.java.html

Functions

from read_roi import read_roi_file
from read_roi import read_roi_zip

roi = read_roi_file(roi_file_path)

# or

rois = read_roi_zip(roi_zip_path)

Note

• Some format specifications are not implemented. See RoiDecoder.java for details.
• Most of "normal" ROI files should work.
• Feel free to hack it and send me modifications.

Requirements

• Python 3.5 and above.

Install

pip install read-roi

Or you can use Anaconda and conda-forge:

conda config --add channels conda-forge
conda install read-roi

License

Under BSD license. See LICENSE.

Authors

• Hadrien Mary [email protected]

Release a new version

• Run tests: pytest -v read_roi/.
• Install rever: conda install -y rever.
• Run check: rever check.
• Bump and release new version: rever VERSION_NUMBER.