letaylor Goto Github PK

academic_cv_resume

A LaTeX academic CV and resume template

affiliation_formatter

A tool to create formatted author and affiliation list for publications based on excel table.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

batchbench

binder-demo-share_results

Demo for sharing results (e.g., a csv file) using qgrid, Binder, and Jupyter.

bioutils

Useful R functions for computational biology

cellbrowser

Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

cellect

CELLECT (CELL-type Expression-specific integration for Complex Traits)

cellex

CELLEX (CELL-type EXpression-specificity)

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cheers

chemprop

Message Passing Neural Networks for Molecule Property Prediction

cit

Causal Inference Test

code_spatial_reconstruction_enterocytes

conda-letaylor

Conda recipes

crispr-mageck-nf

Analyze CRISPR and shRNA functional genetic screening data

cromwell-accountant

A script to calculate estimated cost of a Cromwell workflow on Google Cloud

cromwell-monitor

Generate stats for Cromwell task calls including resource utilization & estimated costs

cupcake

R Package for PCA analysis of Genome Wide Association Studies (GWAS)

cutoff

R package: determining cutoff values from bimodal data

d3e

Discrete Distributional Differential Expression

deeplearning-biology

A list of deep learning implementations in biology

dentist

DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.

docker-letaylor

docker-letaylor-travis

Docker images

drawcell

R package to create cell pictures.

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

eagle

Detect environment effects on ASE

genotyping_scrnaseq

A selection of scripts to assign barcoded single cells to a likely donor given a sorted BAM file and a list of barcodes to consider.

ggalt

:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'