letaylor/eagle

Detect environment effects on ASE

eagle

Environment-ASE through Generalized LinEar modeling

Note you will need the RcppEigen R package installed. In R run

install.packages("RcppEigen")

To compile+install, in this directory run

R CMD INSTALL --build .

For a simple example script on synthetic data look at test.R. For a slightly more involved/realistic example, including eQTLs and realistic filtering options look at big_test.R. _

eagle has been tested under the following architectures:

• Mac OS X Yosemite 10.10.2, R 3.1.2
• Ubuntu 14.04 LTS, R 3.2.2
• Red Hat 4.4.7, R 3.1.2

I have not tried compiling under Windows.