lifewatch/acoustic-receiver-network-analysis

C-POD and fish acoustic receiver network analyses

Belgian cetacean passive acoustic network (BCPAN) analysis (C-POD network)

Analysis of data from C-POD stations:

1. Data exploration & statistical tests: cpod_analysis.R
2. Correlation of different variables (e.g. lost minutes, detection positive minutes (DPM), days of activity): correlation.R
3. Heatmap to visualize data per hour per day per year: heatmap.R
4. NMDS & PERMANOVA: NMDS_PCA.R
5. Cross correlation function for time series of tide and noise: cross_correlation_function.R
6. Cleaning script - yearly export - cpod data.R
7. Descriptive statistics from the C-POD data paper: BCPAN_descriptive_stats.R

Passive Belgian acoustic receiver network (PBARN) analysis

Analysis of data from acoustic receivers:

1. Data exploration: explore_data.R
2. Calculation of receiver efficiency index (REI): REI_compute.R
3. Interpolation of calculated REI: interpolation.py
4. Assessment of station performance based on how much time a receiver was lost/broken/replaced and data availability: station_performance.R

Reference

Ellis, R. D., Flaherty-Walia, K. E., Collins, A. B., Bickford, J. W., Boucek, R., Walters Burnsed, S. L., & Lowerre-Barbieri, S. K. (2019). Acoustic telemetry array evolution: From species- and project-specific designs to large-scale, multispecies, cooperative networks. Fisheries Research, 209(April 2018), 186–195. https://doi.org/10.1016/j.fishres.2018.09.015

acoustic-receiver-network-analysis's Issues

Use a research compendia?

Hi @arnclnge!

May I suggest that this repo is reorganized into a research compendium?
Here some background info:

• Slides: https://mbjoseph.github.io/intro-research-compendia
• Course: https://annakrystalli.me/rrtools-repro-research/create-compendium.html

These are a bit overkill but there are a few easy steps that can make the repo more reproducible. E.g. as a minimum compendium I would:

• Put scripts, markdown reports and any outputs in different folders.
• Add a License (e.g. MIT: https://github.com/lifewatch/acoustic-receiver-network-analysis/community/license/new?branch=main&filename=LICENSE&template=mit)