lig2017/boutonanalyzer

BoutonAnalyzer is software for detection and tracking of structural changes in en passant boutons in time-lapse light-microscopy stacks of images, developed by the Neurogeometry lab.

README

BoutonAnalyzer is software for detection and tracking of structural changes in en passant boutons in time-lapse light-microscopy stacks of images, developed by the Neurogeometry lab.

Requirements

• MATLAB for Mac or Windows, version 2015a or higher

Installation

• Download the repository
• Launch MATLAB and navigate to the software folder
• Type BoutonAnalyzer in the MATLAB command window
• Set paths to the Images, Traces, Profiles, and Results folders in the BoutonAnalyzer main window

Sample Data

• Sample data can be obtained at http://www.northeastern.edu/neurogeometry/resources/bouton-analyzer/

User Manual and Demos

• User Manual is included in the repository
• Optimize Trace and Generate Profile GUI demo: https://www.youtube.com/watch?v=-QsEobWRVZE
• Detect and Track Boutons GUI demo: https://www.youtube.com/watch?v=UoGCRKXuuWc

Contact

• Rohan Gala [email protected]
• Armen Stepanyants [email protected]