Comments (4)
Please follow the official tutorials before starting your personal project.
You can also consider following my translation and demonstrations for these tutorials in Ipython.
These tutorials haven't update to Release 0.9.3 right now and act different when setting up.You may use release 0.9.1~0.9.2 first.Tutorials for release 0.9.3 will update soon.
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Thank you @alchemistcai for helping @lonngxiang and pointing out to the tutorials. @lonngxiang please also consider joining the official LightDock Slack space, which should be a better forum for asking questions. Here it is the invitation link:
https://join.slack.com/t/lightdock/shared_invite/zt-14ezmx2hv-Opr3OgN99~5OfSWeNmUl2A
And to quickly answer your question, the two relevant scripts to see the final ranking are
lgd_top.py
andlgd_rank.py
. There is a complete example using restraints here: https://lightdock.org/tutorials/0.9.2/restraints#53-generating-rank-and-filteringHope it helps!
@brianjimenez Thanks for your patience. Great job
from lightdock.
Thank you @alchemistcai for helping @lonngxiang and pointing out to the tutorials. @lonngxiang please also consider joining the official LightDock Slack space, which should be a better forum for asking questions. Here it is the invitation link:
https://join.slack.com/t/lightdock/shared_invite/zt-14ezmx2hv-Opr3OgN99~5OfSWeNmUl2A
And to quickly answer your question, the two relevant scripts to see the final ranking are lgd_top.py
and lgd_rank.py
. There is a complete example using restraints here: https://lightdock.org/tutorials/0.9.2/restraints#53-generating-rank-and-filtering
Hope it helps!
from lightdock.
Please follow the official tutorials before starting your personal project.
You can also consider following my translation and demonstrations for these tutorials in Ipython.
These tutorials haven't update to Release 0.9.3 right now and act different when setting up.You may use release 0.9.1~0.9.2 first.Tutorials for release 0.9.3 will update soon.
tks,great video and translation
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Related Issues (20)
- Error encountered with DNA scoring function in lightdock3.py for DNA-DNA docking HOT 3
- Migrate tests from nose to pytest HOT 2
- Question about the treatment of protein-ligand docking. HOT 3
- Freezes after a while HOT 6
- Support for non standard amino acids HOT 2
- Ligands are not placed in designated swarm centers HOT 6
- Performance for protein-DNA docking HOT 1
- Use MPI for simulation HOT 3
- Much larger number of swarms in restraints tutorial than shown in docs HOT 4
- [lgd_cluster_bsas.py] Clustering has failed. HOT 9
- Protein-RNA docking HOT 22
- How to choose swarms? HOT 2
- public server output pdb is renumbered HOT 2
- lgd_move_anm.py script HOT 3
- can't multiply sequencce by non-int of type 'Forward' HOT 4
- Membrane vs Transmembrane HOT 1
- Where is lightdock3_setup.py script generated? HOT 4
- Defining steps to run inference HOT 1
- LightDock not running with any proteins. HOT 2
- Membrane atoms not being recognised (BJ) HOT 5
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