liuchen92/papers

Code for manuscripts published by Thompson and colleagues

papers

Code for manuscripts published by Thompson and colleagues.

Year	Code	Publication
2019	red-sea-single-cell-genomes	Thompson, L. R., Haroon, M. F., Shibl, A. A., Cahill, M. J., Ngugi, D. K., Williams, G. J., et al. (2019). Red Sea SAR11 and Prochlorococcus single-cell genomes reflect globally distributed pangenomes. Applied and Environmental Microbiology, 85(13). http://doi.org/10.1128/AEM.00369-19
2017	biocore/emp	Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., et al. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551, 457–463. http://doi.org/doi:10.1038/nature24621
2017	vibrio-fischeri-transcriptomics	Thompson, L. R., Nikolakakis, K., Pan, S., Reed, J., Knight, R., & Ruby, E. G. (2017). Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes. Environmental Microbiology, 19(5), 1845–1856. http://doi.org/10.1111/1462-2920.13684
2016	red-sea-spatial-series	Thompson, L. R., Williams, G. J., Haroon, M. F., Shibl, A., Larsen, P., Shorenstein, J., et al. (2016). Metagenomic covariation along densely sampled environmental gradients in the Red Sea. The ISME Journal, 11, 138–151. http://doi.org/doi:10.1038/ismej.2016.99
2016	cyanophage-light-dark-transcriptomics	Thompson, L. R., Zeng, Q., & Chisholm, S. W. (2016). Gene expression patterns during light and dark infection of Prochlorococcus by cyanophage. PLOS ONE, 11(10), e0165375. http://doi.org/10.1371/journal.pone.0165375