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A computational pipeline for high-resolution profiling of low abundance microbiome in clinical samples using whole genome shotgun sequencing

R 71.08% Shell 28.92%
bioinformatics microbiome-analysis

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csmd's Issues

pathoscope install

Dear Liu,

Do I need to install pathoscope with the complete PathoDB and download the complete NT library with the taxonomy id to use CSMD?

Best,
Ziye

Can we adjust the maximum memory usage?

Dear Liu，

We want to try your pipeline, but currently the maximum memory of our lab server is only 128G. So is there any chance for us to adjust the maximum memory usage?

Best,
Tai

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