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Lorenzo Rovigatti's Projects

oxdna icon oxdna

A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings

oxdna-web icon oxdna-web

Environment for running oxdna.org webserver for oxDNA/oxRNA simulation submission and analysis

patchy_eta_files icon patchy_eta_files

Code, examples and data accompanying the "Diffusion, viscosity and linear rheology of valence-limited disordered fluids" paper

patchyparticles icon patchyparticles

A tutorial code to perform Monte Carlo simulations of patchy particles

pelosa icon pelosa

PELoSA is a Powerful Encoder for Local Stucture Analyses

projectraccoon icon projectraccoon

Automated construction of atomistic and coarse-grained models in the PDB format for polymer peptide conjugates.

pygrace icon pygrace

A Python package for creating xmgrace files.

pyrla icon pyrla

A simple tool to launch multiple processes

quickhull icon quickhull

Header-only single-class implementation of the Quickhull algorithm for convex hulls finding in arbitrary dimension (>1) space.

ramachandran_plotter icon ramachandran_plotter

Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.

tacoxdna icon tacoxdna

A collection of tools for DNA modelling

vmmc icon vmmc

A C++ library to implement the "virtual-move" Monte Carlo algorithm for approximating the dynamical evolution of systems of strongly interacting overdamped particles.

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