Related Issues (15)
- Build bowtie2 index upstream of alignment
- Allow for data directories outside of root dir
- Handle downloading from SRA
- Sleep IFF fastq-dump fails before retrying
- Command-line specification of things to exclude (i.e. splitting paired and unpaired, include v. exclude amplicons)
- Allow downloading of reads only
- Use fasterq-dump instead of fastq-dump!
- Natively support downloading from MG-RAST
- Downloaded fastq files are too big for the storage HOT 3
- Is it possible to run the snakemake command line in any folder? HOT 2
- Bug where single-end section printed even if no single-end samples
- SRA Rule targets need to be fastq.gz
- Use grabseqs
- R is not included in requirements.txt
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from hisss.