Computational workflows for metagenomics tasks, packaged with Snakemake and singularity
- Setup
- Running a workflow
- Available workflows
snakemake --configfile config_preprocessing.yaml \
--snakefile ~/projects/bhattlab_workflows/preprocessing/preprocessing.snakefile \
--profile scg --jobs 100 --use-singularity \
--singularity-args '--bind /labs/,/oak/,/home/'