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Aaron Lun's Projects

scrnaseq icon scrnaseq

Clone of the Bioconductor repository for the scRNAseq package.

scuttle icon scuttle

Clone of the Bioconductor repository for the scuttle package.

simplesinglecellresults icon simplesinglecellresults

Compiled reference results for the simpleSingleCell workflow at https://github.com/MarioniLab/simpleSingleCell.

singlecellthoughts icon singlecellthoughts

Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.

singlepp icon singlepp

Pure C++ implementation of the SingleR method for cell type annotation

singler icon singler

Clone of the Bioconductor repository for the SingleR package.

singlerbook icon singlerbook

The package wrapping the book, for deployment via the Bioconductor build system.

singlerbook-base icon singlerbook-base

See https://github.com/LTLA/SingleRBook for the latest version of this content.

snifter icon snifter

R wrapper for the python openTSNE library

spectra icon spectra

A header-only C++ library for large scale eigenvalue problems

tiledb-r icon tiledb-r

R interface to the TileDB storage manager

tiledbarray icon tiledbarray

Clone of the Bioconductor repository for the TileDBArray package.

trajectoryutils icon trajectoryutils

Clone of the Bioconductor repository for the TrajectoryUtils package.

travelsaroundtheworld icon travelsaroundtheworld

Aaron's tips, tricks and general reminders for travelling around the world. Or at least to civilized places with internet connectivity.

tscan icon tscan

Clone of the Bioconductor repository for the TSCAN package.

tsvd icon tsvd

Truncated SVD algorithms in C++

tximport icon tximport

Import and summarize transcript-level estimates for gene-level analysis

umap-fun icon umap-fun

Demonstration of browser-side compute until Jay gets off his damn ass and gets back to work.

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