lzamparo Goto Github PK

allennlp-demo

code for demo.allennlp.org

aml_atac

Analyzing the ATAC-seq data from Eirini & Tiansu's AML development model

attentiondeepmil

Implementation of Attention-based Deep Multiple Instance Learning in PyTorch

awesome-deeplearning-resources

Deep Learning and deep reinforcement learning research papers and some codes

bindspace_revisions

Revisions for BindSpace

blog_source

source and posts that generates content for lzamparo.github.io

coling2018

data and code for coling2018 paper

computational-project-cookie-cutter

A cookie cutter to set up a folder structure for a computational project

crisprml

Library design for CRISPr screen

dask-jobqueue

Deploy Dask on job schedulers like PBS, SLURM, and SGE

dice

Generate Diverse Counterfactual Explanations for any machine learning model.

dnabarcodes

Simple generator of DNA barcodes for sequencing experiments

docnade

TensorFlow implementation of DocNADE

dpmm

Dirichlet process mixture model for Gaussian observations

dpmm_snippy

embedding

Learning semantic embeddings for TF binding preferences directly from sequence

epig

Prediction-oriented Bayesian active learning (AISTATS 2023)

eval_gen

Evaluation code with models for the paper "On the Quantitative Analysis of Decoder-Based Generative Models"

genomicspapers

The Leek group guide to genomics papers

gpu_research_centre_grant

My portion of the GPU research centre grant proposal

hic-align

Suite of scripts to align and count HiC reads

hmc_gpu

Code to accompany the paper "Fast Hamiltonian Monte Carlo Using GPU Computing"

idr

IDR

kale

KALE's A Learning Engine.

kipoi

Kipoi's model zoo API

lectures

Oxford Deep NLP 2017 course

lzamparo.github.io

my github.io site

macs

MACS -- Model-based Analysis of ChIP-Seq

mcmc_and_dynamics

Practice with MCMC methods and dynamics (Langevin, Hamiltonian, etc.)

mistral-src

Reference implementation of Mistral AI 7B v0.1 model.