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neonatal_apnea_prediction

Neonatal apnea and hypopnea prediction in infants with Robin sequence with neural additive models for time series.

neural_timeseries_diffusion

This repository contains research code for the preprint "Generating realistic neurophysiological time series with denoising diffusion probabilistic models".

nflows

Normalizing flows in PyTorch

nflows-nofork

Normalizing flows in PyTorch

nonstat_plds

open-comp-neuro

A first start as a resource for pooling lecture materials for computational neuroscience course

phase-limit-cycle-rnns

Code for "Trained recurrent neural networks develop phase-locked limit cycles in a working memory task" - Matthijs Pals (@matthijspals) , Jakob Macke and Omri Barak.

poisson-gpfa

Gaussian process factor analysis with Poisson observations

py4sid

subspace identification for linear systems

pyknos

conditional density estimation with neural networks

pylds_dev

large-scale implementation of the expectation-maximisation algoithm in python for the linear dynamical system

pyloric

Simulator of the pyloric network in cython.

pyrnn

General code for training (biologically inspired) recurrent neural networks. Code by Matthijs Pals (@matthijspals)

python-intro

A collection of introductory exercises and materials for Python, assembled by @alcrene and @ASpeiser

rabi

Code for robust amortized bayesian inference package

results

Results and code for reproducibility

s3id

subspace identficiation for partially observed high-dimensional data

sbi

Simulation-based inference toolkit

sbi-for-connectomics

Research code and results for the paper "Simulation-based inference for computational connectomics" (Boelts et al. 2023 PLoS CB, @janfb)

sbi_joss

SBI JOSS manuscript source

sbibm

Simulation-based inference benchmark

sequence-memory

Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@matthijspals)

sinn

A library for both Simulation and INference of dynamical systems. Maintained by @alcrene

snl

Python 3 port of SNL

snvi_repo

Reproduce results from the SVNI paper, Glöckler et al. 2022, ICLR

spikefinder_sv-deepspike

Code for submission of Speiser et al to spike-finder-challenge 2017

ssm_simulators

Python Package which collects simulators for Sequential Sampling Models. Forked for MNLE-LAN comparison, @janfb

stg_energy

Repo for STG energy paper. Michael (@michaeldeistler) and Pedro (@ppjgoncalves).

theano_shim

A simple interface to easily switch between using Theano and pure Numpy. Maintained by @alcrene

tsnpe_neurips

Code to reproduce results from `Truncated proposals for scalable and hassle-free simulation-based inference`