mackelab/deepspike

deepspike's Issues

[Code Quality] Incomplete Repo information

Your repo does not comply to the standards we defined in the lab.
Make sure for your repo to have:

• a description including the github handle of the owner
• a > 3 line README.md

If you don't update your repo, it will be disabled and then archived.

Requirements.txt

Having trouble with library compatibility - could you include an environment file please?

TypeError: conv1d_mc0() got an unexpected keyword argument 'filter_flip'

In "Ex1_FOOPSI_CNN.py"

model = VIMCO(init_params, inf_params, FOOPSI, recDict, BernoulliRecognition, batch_size=20, n_samples = 64, n_cells = n_cells, rng = rng, filename = 'foopsi_model')

Traceback (most recent call last):

File "", line 1, in
model = VIMCO(init_params, inf_params, FOOPSI, recDict, BernoulliRecognition, batch_size=20, n_samples = 64, n_cells = n_cells, rng = rng, filename = 'foopsi_model')

File "./engine\VIMCO_alpha.py", line 27, in init
super().init(rec_params, REC_MODEL, batch_size, n_samples, filename, rng, use_patience)

File "./engine\TrainingAlgos.py", line 65, in init
self.mrec = rec_model(rec_params, self.X, self.S, self.P, self.rng, self.batch_size)

File "./engine\RecognitionModel.py", line 88, in init
self.p = ll.get_output(self.NN, inputs=self.X)

File "./engine\layers\helper.py", line 220, in get_output
all_outputs[layer] = layer.get_output_for(inputs_n, **kwargs_n)

File "./engine\layers\conv.py", line 331, in get_output_for
conved = self.convolve(input, **kwargs)

File "./engine\layers\conv.py", line 485, in convolve
filter_flip=self.flip_filters)

TypeError: conv1d_mc0() got an unexpected keyword argument 'filter_flip'