mangul-lab-usc Goto Github PK

geditv1.4

geditv1.6

NewerVersionOfGEDIT

genomic-deserts-publication

genomic-deserts

genomics.usc.hpc

rna.seq.pipeline for USC HPC

hla_benchmark

immune-repertoires-vertebrate-species

Developing efficient and scalable bioinformatics methods and databases to analyze the adaptive immune repertoires across vertebrate species

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

imrep_publication

imrep_publication_old

introduction-to-bioinformatics-and-biomedical-data-science

This is a six module graduate-level course covering the fundamentals of transparent and reproducible bioinformatics, targeted towards biomedical students.

isbra22

https://mangul-lab-usc.github.io/ISBRA22/

isbra23

https://mangul-lab-usc.github.io/ISBRA23/

jupyter_notebook_tutorial

mangul-lab-usc.github.io

Website for Mangul Lab.

metadata-completeness

metadata_sepsis

microbiome_master_db

Creating a master reference database for metagenomic research

msc-thesis-ruiwei-guo

needle

Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.

omics-data-reusability

omics-packaging-containerizing

This is the GitHub repository for our recent study "Packaging and containerizing of bioinformatics software: advances, challenges, and opportunities" Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.

online.bioinformatics

packaging_bioinformatics_software

Packaging_bioinformatics_software

pharmbioinfo

pkg-manager-review

Manubot Repo for Package Manager Review Paper

presentations

repository for various presentations by members of Mangul lab at USC

project_skeleton

This is a skeleton of how future projects in the lab should be organized on Github.

pseudo_map

A pseudo DNA/RNA mapping tool that selects the optimal package based on the read length.

pytcr

pytcr_publication