maozhitao Goto Github PK

prompt-engineering-guide

🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

protein_ml

Machine learning workflows for analyzing high-throughput protein data

psamm

Curation and analysis of metabolic models

pymodulon

Python package for analyzing and visualizing iModulons

pyomo

The main repository for the Pyomo optimization modeling software.

pyomo_simplemodel

An extension of Pyomo that defines a simple modeling class that is similar to PuLP

pytfa

A Python 3 implementation of Thermodynamics-based Flux Analysis

python-100-days

Python - 100天从新手到大师

reframed

ReFramed: metabolic modeling package

rnacocktail

rnaseq_2019

Content for RNAseq 2019 workshop

salislabcode

Models, design algorithms, and other software related to Salis lab publications

selene

a framework for training sequence-level deep learning networks

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

skimpy

Symbolic Kinetic Models with Python

spider

Python网络爬虫

standard-gem

The standard for open-source GEMs on GitHub

statsintro_python

Python modules and IPython Notebooks, for the book "Introduction to Statistics With Python"

strain_characterization_workflow

Code to characterize strains from multiple disparate data types

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

tcga_example

tellurium

Python Environment for Modeling and Simulating Biological Systems

tfmeta

TFmeta: Uncovering Transcription Factors Governing Metabolic Reprogramming

thealgorithms-python

TheAlgorithms/Python

training-modules

Materials for short, half-day workshops

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

wholecellecolirelease

Release of the whole cell E. coli model.

work

workshop-scrnaseq

Single cell RNA sequencing analysis course

yeast-gem

The consensus GEM for Saccharomyces cerevisiae