Comments (4)
got algorithm mostly figured out by this point; will implement soon
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One small thing -- I guess this will mean that .gv/.xdot export isn't (easily) doable on 1-node components, then?
(We could "fake" this info, I guess, but I don't think that'd be super valuable? I guess we can do it anyway.)
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Remaining TODOs related to this:
- do some more testing to verify the SPQR layout "faking" is entirely ok
Add .gv export with the "faked" info if-- this actually seems kind of useless, and IMO it'd be a better use of time to just take a few seconds and mention the lack of gv/xdot export for single-node components in the README.-pg
is passed
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After doing some testing -- looks ok.
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Related Issues (20)
- Prevent long node labels from extending past pattern boundaries
- Change the "chain" color to something more neutral HOT 1
- New type of pattern: bipartite subgraphs HOT 1
- Better component tiling
- Aggregate some statistics in node / edge tables
- Add "select all" option
- Blurry exported screenshots HOT 1
- Automatically cropping screenshots HOT 1
- Pass PATTERN2COLOR from Python to JS?
- Allow searching to return complements if needed
- Thicken duplicate edges HOT 1
- [Feature Request] Output a graph file that could be used elsewhere (e.g., NetworkX, iGraph, or Cytoscape) HOT 4
- Compress main.js more
- Pass extra GFA segment / link attributes (tags) to the visualization
- Support duplicate (aka parallel) edges in GFA / FASTG files?
- Draw arrowheads in both directions for self-implying edges
- Identifying cyclic bubbles? HOT 1
- Identify cyclic frayed ropes?
- Support general node / edge metadata
- Adjust max node / max edge counts to consider the top layer of the decomposed graph
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