Comments (3)
Now that the JSON stuff has been resolved (all AsmViz graphs are now exportable via cy.json()
) this should be quite doable.
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Yeah, creating a "export graph state" button seems like it'd be just a standard call to JSON.stringify(cy.json())
exported via a data URI, but that generates a really large string (~690,000 characters for component 3 [870 nodes, 1172 edges] of the Shakya assembly). And then we run into the same problem we ran into with exporting DNA.
We could also use eles.json()
or something similar, to avoid passing deducible style information I guess. Look into this.
from metagenomescope.
We could look into storing those JSON graph-state files on the server (if/when we host the viewer interface on a server), so they could be loaded from there. I think that would work.
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Related Issues (20)
- Prevent long node labels from extending past pattern boundaries
- Change the "chain" color to something more neutral HOT 1
- New type of pattern: bipartite subgraphs HOT 1
- Better component tiling
- Aggregate some statistics in node / edge tables
- Add "select all" option
- Blurry exported screenshots HOT 1
- Automatically cropping screenshots HOT 1
- Pass PATTERN2COLOR from Python to JS?
- Allow searching to return complements if needed
- Thicken duplicate edges HOT 1
- [Feature Request] Output a graph file that could be used elsewhere (e.g., NetworkX, iGraph, or Cytoscape) HOT 4
- Compress main.js more
- Pass extra GFA segment / link attributes (tags) to the visualization
- Support duplicate (aka parallel) edges in GFA / FASTG files?
- Draw arrowheads in both directions for self-implying edges
- Identifying cyclic bubbles? HOT 1
- Identify cyclic frayed ropes?
- Support general node / edge metadata
- Adjust max node / max edge counts to consider the top layer of the decomposed graph
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