Comments (3)
TODOs:
- GFA support (read CIGAR string in the preprocessing step, and store that info in the .db file)
- Ensure that this doesn't produce ambiguities in LastGraph files (since overlap data doesn't seem to be given for those graphs, make sure that the user knows that solid edges in that case don't mean overlaps)
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Look into collapsing overlapping nodes. And if that wouldn't be possible then figure out something else
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For reading CIGAR strings, see this documentation.
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Related Issues (20)
- Prevent long node labels from extending past pattern boundaries
- Change the "chain" color to something more neutral HOT 1
- New type of pattern: bipartite subgraphs HOT 1
- Better component tiling
- Aggregate some statistics in node / edge tables
- Add "select all" option
- Blurry exported screenshots HOT 1
- Automatically cropping screenshots HOT 1
- Pass PATTERN2COLOR from Python to JS?
- Allow searching to return complements if needed
- Thicken duplicate edges HOT 1
- [Feature Request] Output a graph file that could be used elsewhere (e.g., NetworkX, iGraph, or Cytoscape) HOT 4
- Compress main.js more
- Pass extra GFA segment / link attributes (tags) to the visualization
- Support duplicate (aka parallel) edges in GFA / FASTG files?
- Draw arrowheads in both directions for self-implying edges
- Identifying cyclic bubbles? HOT 1
- Identify cyclic frayed ropes?
- Support general node / edge metadata
- Adjust max node / max edge counts to consider the top layer of the decomposed graph
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