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fedarko avatar fedarko commented on May 25, 2024

TODOs:

  • GFA support (read CIGAR string in the preprocessing step, and store that info in the .db file)
  • Ensure that this doesn't produce ambiguities in LastGraph files (since overlap data doesn't seem to be given for those graphs, make sure that the user knows that solid edges in that case don't mean overlaps)

from metagenomescope.

fedarko avatar fedarko commented on May 25, 2024

Look into collapsing overlapping nodes. And if that wouldn't be possible then figure out something else

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fedarko avatar fedarko commented on May 25, 2024

For reading CIGAR strings, see this documentation.

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