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License: MIT License
Basic C++ functionality used by other projects
License: MIT License
SeqPurge breaks when trying to analyze FastQ Failes containing NNNs because python/matpltlib cannot handle the std::nan values. Attached error log:
SeqPurge 2020_03-14-gb8992490
Programming exception: Could not execute python script:
/tmp/JfnYcj8yEYX56orU.py
Error message is: Traceback (most recent call last):
File /tmp/JfnYcj8yEYX56orU.py, line 8, in <module>
plt.plot([1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151],[22.1895,23.2614,25.4152,16.7397,38.0745,38.5331,31.161,34.9258,12.9866,28.7465,22.4733,26.3053,22.3107,22.3866,30.8404,29.7594,29.0602,28.856,28.9542,28.7927,28.6771,28.8239,28.6898,28.6026,28.3717,28.1127,27.9649,28.1051,28.2754,28.5838,28.6463,28.6419,28.5335,28.2907,28.2842,28.4489,28.2582,28.3918,28.3042,28.3251,28.3359,28.4903,28.2813,28.3598,28.2688,28.3312,28.2872,28.2296,28.257,28.3199,28.3353,28.3175,28.3385,28.4446,28.3491,28.2895,28.1773,27.9305,27.9859,28.1301,28.2056,28.3568,28.3267,28.1979,28.1666,28.0026,28.0529,27.9305,27.9568,27.9279,27.9587,28.0801,28.0334,28.14,28.1433,28.0958,28.0189,27.886,27.7983,27.657,27.7115,27.8287,27.8969,28.0283,27.9557,28.0158,27.8458,27.6656,27.5092,27.353,27.4543,27.4974,27.6261,27.6175,27.7402,27.7922,27.6957,27.538,27.3314,27.1573,27.1197,27.1613,27.2434,27.2679,27.4253,27.4576,27.4673,27.318,27.0881,26.8911,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan,nan], label='A')
NameError: name 'nan' is not defined
Location : ../../src/cppCORE/LinePlot.cpp:138
This should not happen, please report the error to the developers!
ERROR: 'Call of external tool '/mnt/share/opt/ngs-bits-2020_03-14-gb8992490/SeqPurge' returned error code '1'.' in /mnt/SRV018/users/all/megSAP/src/Common/ToolBase.php:723.
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