- Scripts and workflow for quality control, merging, and imputation of genotyping data across enteric challenge studies; T1, T2, P1, Tyger, PATCH and VAST
- QC steps performed using PLINK, R, Liftover (37-38), BCFtools and shell scripting
- Imputation of genotyping data using TOPMED server https://imputation.biodatacatalyst.nhlbi.nih.gov
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View Code? Open in Web Editor NEWHuman challenge model of enteric fever GWAS