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sourmash???
something kmer based?
CAP
only with filtered contigs
make blast optional
annotation visualisation and comparison
circularise
If and only if, there are end-to-end overlaps, get rid of one
- map (or blast/mmseqs) contig against itself
- check if there is an overlap
- remove one side
no clear error message if spades.filtered.fasta empty
as example see:
/Rozella_allomycis_CSF55/work/b1/9e573062e3e2d2885eed5279db223a
MITOS parallel
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