matteobachetti/pulsar_docker

Docker image with pulsar software.

pulsar_docker

Builds a docker image for a pulsar analysis packages and few extras on Ubuntu 16.04 LTS.

Includes

• calceph
• ds9
• fv
• psrcat
• tempo
• tempo2
• psrxml
• psrchive
• sofa c-library
• sofa fortran-library
• sigproc
• sigpyproc
• h5check
• dal
• dspsr
• geographicLib
• h5edit
• fitsverify
• psrsalsa
• pypsrfits
• presto
• wapp2psrfits
• psrfits2psrfits
• psrfits_utils
• pyslalib
• vpsr
• gpy
• coast_guard
• setuptools
• numpy
• scipy
• pandas
• h5py
• fitsio
• astropy
• astroplan
• pytz
• paramz
• aplpy
• pyfits
• peakutils
• pymc
• matplotlib
• seaborn
• lmfit
• pyephem
• and all their dependencies (pgplot5, fftw, etc)

You'll find all pulsar software in /home/psr/software, environment variables are set according to ~/.mysetenv.bash file.

Using

To build:

docker build -t pulsar_docker .

To run image:

docker run -it pulsar_docker /bin/bash

To mount data directory into the docker container with the -v flag:

docker run -it -v <data_location>:/data pulsar_docker /bin/bash

This will drop you in to an ubuntu os with bash shell with all data in /data.

To run the image with X11 and mounted data directory, run the container first:

docker run -d -p 2222:22 -v <data_location>:/data pulsar_docker

Check if container is running with docker ps -a. You can log in using psr as password:

ssh -XY psr@localhost -p 2222

Issues

Report problems to [email protected]