maulikkamdar/ontoapps-stanford

An umbrella platform for all my Biomedical Web applications

OntoApps-Stanford

An umbrella platform for all my Biomedical Web applications.

This is the codebase for all my Biomedical Web applications, that can be directly deployed using a Python Flask container.

This umbrella platform is deployed online at http://onto-apps.stanford.edu/

Due to file size limits, I have not uploaded the Data folder, that contains the rendered graph for both OntoReuse and PHLeGrA for querying, as well as the data and models for the M3CRNN application, and the datasets for BiOnIC and VisIOn applications. Please email [email protected] and I will share a zipped version of the data folder. You can then unzip it under "static/data" folder.

To deploy the platform locally, just run python app.py and the application should be online at 127.0.0.1:8080

Library Requirements

NetworkX

NumPy

Flask

Pandas

Scipy

Scikit-Learn

Tensorflow

Matplotlib