Workflow overview:
- Raw sequencing data was processed using QIIME2 in a Snakemake workflow.
- Raw reads are stored at NCBI with accession PRJNA1068094
- The Snakemake workflow consisted of the following steps:
- The Snakemake workflow was run on the Quest High-Performance Computing Cluster
- Analysis and visualization was performed in R with most work performed on the Quest Analytics Node
Data files are available upon request.
This research was supported in part through the computational resources and staff contributions provided for the Quest high performance computing facility at Northwestern University which is jointly supported by the Office of the Provost, the Office for Research, and Northwestern University Information Technology.